Run blank injections (solvent only) and compare chromatograms to spot ghost peaks. Systematic checks of tubing, filters, and solvent conditions are essential for diagnosing and resolving these issues. Differentiating between column, injector, or detector problems requires assessing peak behavior and conducting targeted tests. Systematic troubleshooting and documentation are key. Proper peak matching and identification across different chromatograms is critical prior to any subsequent analysis but is challenging without using mass spectrometry. The purpose of this work was to describe and validate a peak matching and identification method called retention time trajectory. Peak Evaluation is an automated and customizable tool for the comparison of chromatographic data to a previously collected reference chromatogram. These hyphenated methods provide high-dimensional data. Comparing such data manually. We developed an improved version of the MOCCA Python package with a web-based graphical user interface (GUI) for automated processing of chromatograms, including baseline correction, intelligent peak picking, peak purity checks, deconvolution of overlapping peaks, and compound tracking. The. FDA's (Food and Drug Administration) 21 CFR Part 11 provides guidelines on electronic records and electronic signatures, outlining requirements for their accuracy, reliability, and security.